Regtricks
stable
Contents:
Overview
Quickstart
FSL integration
Contributing
Module index
Index
Regtricks
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Index
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A
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B
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C
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D
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F
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G
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I
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J
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L
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M
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N
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P
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R
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S
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T
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V
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W
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X
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_cache (regtricks.transforms.transform.Transform attribute)
A
aff_trans() (in module regtricks.application_helpers)
apply_to_array() (regtricks.transforms.transform.Transform method)
apply_to_image() (regtricks.transforms.transform.Transform method)
B
bbox_origin (regtricks.image_space.ImageSpace attribute)
C
cache (regtricks.transforms.transform.Transform attribute)
cast_potential_array() (in module regtricks.multiplication)
chain() (in module regtricks.multiplication)
check_is_x5() (in module regtricks.x5_interface)
create_axis_aligned() (regtricks.image_space.ImageSpace class method)
D
despatch() (in module regtricks.application_helpers)
det_jacobian() (in module regtricks.fnirt_coefficients)
F
file_name (regtricks.image_space.ImageSpace attribute)
flirt() (in module regtricks.wrappers)
fnirt() (in module regtricks.wrappers)
FNIRTCoefficients (class in regtricks.fnirt_coefficients)
fov_size (regtricks.image_space.ImageSpace attribute)
from_flirt() (regtricks.transforms.linear.MotionCorrection method)
(regtricks.transforms.linear.Registration class method)
from_fnirt() (regtricks.transforms.nonlinear.NonLinearRegistration class method)
from_mcflirt() (regtricks.transforms.linear.MotionCorrection class method)
from_registration() (regtricks.transforms.linear.MotionCorrection class method)
FSL2vox (regtricks.image_space.ImageSpace attribute)
FSL2world (regtricks.image_space.ImageSpace attribute)
G
get_cache_value() (regtricks.fnirt_coefficients.FNIRTCoefficients method)
(regtricks.fnirt_coefficients.NonLinearProduct method)
get_displacements() (regtricks.fnirt_coefficients.FNIRTCoefficients method)
(regtricks.fnirt_coefficients.NonLinearProduct method)
get_field() (in module regtricks.fnirt_coefficients)
get_highest_type() (in module regtricks.multiplication)
I
identity() (regtricks.transforms.linear.MotionCorrection class method)
(regtricks.transforms.linear.Registration class method)
ijk_grid() (regtricks.image_space.ImageSpace method)
ImageSpace (class in regtricks.image_space)
intensity_correct (regtricks.transforms.nonlinear.NonLinearRegistration attribute)
interpolate_and_scale() (in module regtricks.application_helpers)
inverse() (regtricks.transforms.linear.Registration method)
(regtricks.transforms.nonlinear.NonLinearRegistration method)
is_linear (regtricks.transforms.transform.Transform attribute)
is_nonlinear (regtricks.transforms.transform.Transform attribute)
islinear (regtricks.transforms.transform.Transform attribute)
isnonlinear (regtricks.transforms.transform.Transform attribute)
J
jmax (regtricks.fnirt_coefficients.FNIRTCoefficients attribute)
(regtricks.fnirt_coefficients.NonLinearProduct attribute)
jmin (regtricks.fnirt_coefficients.FNIRTCoefficients attribute)
(regtricks.fnirt_coefficients.NonLinearProduct attribute)
L
load_manager() (in module regtricks.x5_interface)
M
make_nifti() (regtricks.image_space.ImageSpace method)
manual() (regtricks.image_space.ImageSpace class method)
mcflirt() (in module regtricks.wrappers)
moco() (in module regtricks.multiplication)
MotionCorrection (class in regtricks.transforms.linear)
N
n_vox (regtricks.image_space.ImageSpace attribute)
nonlinearmoco() (in module regtricks.multiplication)
NonLinearMotionCorrection (class in regtricks.transforms.nonlinear)
NonLinearProduct (class in regtricks.fnirt_coefficients)
nonlinearreg() (in module regtricks.multiplication)
NonLinearRegistration (class in regtricks.transforms.nonlinear)
P
postmat_to_fsl() (regtricks.transforms.nonlinear.NonLinearRegistration method)
premat_to_fsl() (regtricks.transforms.nonlinear.NonLinearRegistration method)
prepare_cache() (regtricks.transforms.linear.Registration method)
(regtricks.transforms.nonlinear.NonLinearRegistration method)
R
read_affine() (in module regtricks.x5_interface)
read_imagespace() (in module regtricks.x5_interface)
read_metadata() (in module regtricks.x5_interface)
ref2src (regtricks.transforms.linear.MotionCorrection attribute)
(regtricks.transforms.linear.Registration attribute)
Registration (class in regtricks.transforms.linear)
registration() (in module regtricks.multiplication)
regtricks (module)
regtricks.application_helpers (module)
regtricks.fnirt_coefficients (module)
regtricks.image_space (module)
regtricks.multiplication (module)
regtricks.transforms (module)
regtricks.transforms.linear (module)
regtricks.transforms.nonlinear (module)
regtricks.transforms.transform (module)
regtricks.wrappers (module)
regtricks.x5_interface (module)
reset_cache() (regtricks.transforms.transform.Transform method)
resize() (regtricks.image_space.ImageSpace method)
resize_voxels() (regtricks.image_space.ImageSpace method)
resolve() (regtricks.transforms.linear.MotionCorrection method)
(regtricks.transforms.linear.Registration method)
(regtricks.transforms.nonlinear.NonLinearMotionCorrection method)
(regtricks.transforms.nonlinear.NonLinearRegistration method)
S
save() (regtricks.transforms.transform.Transform method)
save_fsl() (regtricks.transforms.linear.MotionCorrection method)
(regtricks.transforms.linear.Registration method)
save_image() (regtricks.image_space.ImageSpace method)
save_like() (regtricks.image_space.ImageSpace class method)
save_manager() (in module regtricks.x5_interface)
save_txt() (regtricks.transforms.linear.MotionCorrection method)
(regtricks.transforms.linear.Registration method)
size (regtricks.image_space.ImageSpace attribute)
src2ref (regtricks.transforms.linear.MotionCorrection attribute)
(regtricks.transforms.linear.Registration attribute)
src_load_helper() (in module regtricks.application_helpers)
sum_array_blocks() (in module regtricks.application_helpers)
T
to_flirt() (regtricks.transforms.linear.Registration method)
to_fsl() (regtricks.transforms.linear.MotionCorrection method)
(regtricks.transforms.linear.Registration method)
touch() (regtricks.image_space.ImageSpace method)
Transform (class in regtricks.transforms.transform)
transform() (regtricks.image_space.ImageSpace method)
transforms (regtricks.transforms.linear.MotionCorrection attribute)
V
vox2FSL (regtricks.image_space.ImageSpace attribute)
vox2world (regtricks.image_space.ImageSpace attribute)
vox_size (regtricks.image_space.ImageSpace attribute)
,
[1]
voxel_centres() (regtricks.image_space.ImageSpace method)
W
world2FSL (regtricks.image_space.ImageSpace attribute)
world2vox (regtricks.image_space.ImageSpace attribute)
,
[1]
write_affine() (in module regtricks.x5_interface)
write_imagespace() (in module regtricks.x5_interface)
write_metadata() (in module regtricks.x5_interface)
X
X5Error
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